Function that decides most of the parameters that will be used during the "Haystack" analysis.

Function that decides most of the parameters that will be used during the "Haystack" analysis.

get_parameters_haystack(x, y, high.resolution = FALSE)

Arguments

x

x-axis coordinates of cells in a 2D representation (e.g. resulting from PCA or t-SNE)

y

y-axis coordinates of cells in a 2D representation

high.resolution

Logical: should high resolution be used? Default is FALSE.

Value

A list containing various parameters to use in the analysis.